| College Name | Total MSc Fees (INR) | Specializations Offered |
| Banaras Hindu University (BHU) | Rs. 3,000 – Rs. 37,320 | Physics, Chemistry, Zoology, Botany, Mathematics, Computer Science, Statistics, Environmental Science |
| Indian Institute of Technology (IIT) Kharagpur | Rs. 27,650 – Rs. 25,00,000 | Physics, Chemistry, Mathematics, Statistics, Earth Sciences, Environmental Science |
| Madras Christian College | Rs. 13,000 – Rs. 1,83,000 | Physics, Chemistry, Zoology, Botany, Mathematics, Computer Science, Biotechnology |
| Government T.D. Medical College | Rs. 10,510 – Rs. 4,80,999 | Medical Physics, Biochemistry, Microbiology |
| University College, Thiruvananthapuram | Rs. 3,000 – Rs. 50,000 | Physics, Chemistry, Mathematics, Zoology, Botany |
| Annamalai University | Rs. 20,000 – Rs. 1,00,000 | Physics, Chemistry, Zoology, Botany, Mathematics, Computer Science, Biotechnology |
| Gauhati University | Rs. 10,000 – Rs. 30,000 | Anthropology, Biotechnology, Botany, Chemistry, Computer Science, Electronics, Environmental Science, Geography, Geology, Mathematics, Microbiology, Physics, Statistics, Zoology, Wildlife Science |
| Presidency College | Rs. 925 (1st Year Fees) | Physics, Chemistry, Zoology, Botany, Mathematics, Computer Science |
| Miranda House | Rs. 32,340 | Physics, Chemistry, Zoology, Botany, Mathematics |
| Hansraj College | Rs. 33,108 | Physics, Chemistry, Zoology, Botany, Mathematics |